resimpy.pcr package

Submodules

resimpy.pcr.Amplify module

class resimpy.pcr.Amplify.amplify(pcr_params)[source]

Bases: object

flow(params)[source]

np()[source]

resimpy.pcr.AmplifyTransloc module

class resimpy.pcr.AmplifyTransloc.amplifyTransloc(pcr_params)[source]

Bases: object

flow(params)[source]

np()[source]

resimpy.pcr.Error module

class resimpy.pcr.Error.error(method)[source]

Bases: object

epos2_deprecate(ampl_read_len_list)[source]

epos_deprecate(spl_nt_ids, ampl_read_len_list)[source]

Parameters

spl_nt_ids – is a list of ids of nucleotides to be modified.
ampl_read_len_list – a list of lengths of reads to be amplified.

Returns

postable(res2p, kind='index_by_same_len')[source]

Parameters: res2p –
Returns

postableIndexBySameLen(seq_len, num_seq)[source]

postableLambda(x, ids, pos_ids)[source]

postable_deprecate(x, ids, pos_ids)[source]

tactic1(arr_2d)[source]

todict(nucleotides, reverse=False)[source]

todict5(arr_2d)[source]

Parameters: arr_2d –
Returns

worktable(x, ids)[source]

resimpy.pcr.ErrorTransloc module

class resimpy.pcr.ErrorTransloc.errorTransloc(method)[source]

Bases: object

postable(res2p, kind='index_by_same_len')[source]

Parameters: res2p –
Returns

postableIndexBySameLen(seq_len, num_seq)[source]

postableLambda(x, ids, pos_ids)[source]

todict(nucleotides, reverse=False)[source]

todict5(arr_2d)[source]

worktable(x, ids)[source]

Module contents