resimpy.read.umi package

Submodules

resimpy.read.umi.Design module

class resimpy.read.umi.Design.design(*args, **kwargs)

Bases: resimpy.read.inf.Pseudo.pseudo

general(**kwargs)

reoccur(**kwargs)

write(**kwargs)

resimpy.read.umi.Filter module

class resimpy.read.umi.Filter.filter

Bases: object

method()

paired(x, rule)

singleStart(x, start, end)

resimpy.read.umi.Library module

class resimpy.read.umi.Library.library(*args, **kwargs)

Bases: object

resimpy.read.umi.RuleOut module

class resimpy.read.umi.RuleOut.ruleOut(read_summary)

Bases: object

sequential(umi_pos_in_struct, compo_struct)

if i == 0:

rule_out_struct_dict[‘umi_1’] = compo_struct[:umi_pos_in_struct[i]]

# elif i == len(umi_pos_in_struct) - 1: # rule_out_struct_dict[‘umi_end’] = compo_struct[umi_pos_in_struct[i] + 1:] else:

rule_out_struct_dict[’umi_’ + str(i)] = compo_struct[umi_pos_in_struct[i - 1] + 1: umi_pos_in_struct[i]]

Parameters

• umi_pos_in_struct –

• compo_struct –

Returns

Module contents