resimpy.simulate.dispatcher.batch package

Submodules

resimpy.simulate.dispatcher.batch.Bulk module

resimpy.simulate.dispatcher.batch.CDNA module

resimpy.simulate.dispatcher.batch.General module

class resimpy.simulate.dispatcher.batch.General.general(mode, permutation_num=10, umi_unit_pattern=1, umi_unit_len_fixed=10, seq_len=20, umi_num_fixed=50, pcr_num_fixed=10, pcr_err_fixed=0.001, seq_err_fixed=0.001, ampl_rate_fixed=0.85, sim_thres_fixed=3, seq_sub_spl_rate=1, ampl_rates=None, umi_unit_lens=None, pcr_nums=None, pcr_errs=None, seq_errs=None, sv_fp='./')[source]

Bases: object

amplRates()[source]

pcrErrs()[source]

pcrNums()[source]

seqErrs()[source]

umiLens()[source]

resimpy.simulate.dispatcher.batch.General.run()[source]

resimpy.simulate.dispatcher.batch.GeneralCondi module

resimpy.simulate.dispatcher.batch.SingleCell module

resimpy.simulate.dispatcher.batch.UMI module

class resimpy.simulate.dispatcher.batch.UMI.umi[source]

Bases: object

amplRates()[source]

errors()[source]

pcrErrs()[source]

pcrNums()[source]

seqErrs()[source]

umiLens()[source]

resimpy.simulate.dispatcher.batch.UMIDouble module

resimpy.simulate.dispatcher.batch.UMIDouble.run()[source]

class resimpy.simulate.dispatcher.batch.UMIDouble.umiDouble(mode, transloc_rate=0.02, permutation_num=10, umi_unit_pattern=1, umi_unit_len_fixed=10, umi_num_fixed=50, pcr_num_fixed=10, pcr_err_fixed=0.001, seq_err_fixed=0.001, ampl_rate_fixed=0.85, sim_thres_fixed=3, seq_sub_spl_rate=1, ampl_rates=None, umi_unit_lens=None, pcr_nums=None, pcr_errs=None, seq_errs=None, sv_fp='./')[source]