resimpy.simulate.initiator package

Submodules

resimpy.simulate.initiator.Bulk module

resimpy.simulate.initiator.CDNA module

resimpy.simulate.initiator.General module

class resimpy.simulate.initiator.General.general(seq_num, is_seed=False, umi_unit_pattern=3, umi_unit_len=12, seq_len=100, is_sv_umi_lib=True, is_sv_seq_lib=True, umi_lib_fpn='./umi.txt', seq_lib_fpn='./seq.txt', working_dir='./simu/', condis=['umi'], sim_thres=2, permutation=0)

Bases: object

paste(read_struct=[])

pooling()

property umi_len

resimpy.simulate.initiator.GeneralCondi module

resimpy.simulate.initiator.SingleCell module

resimpy.simulate.initiator.UMI module

class resimpy.simulate.initiator.UMI.umi(seq_num, is_seed=False, umi_unit_pattern=3, umi_unit_len=12, is_sv_umi_lib=True, umi_lib_fpn='./umi.txt', working_dir='./simu/', condis=['umi'], sim_thres=2, permutation=0)

Bases: object

paste(read_struct=[])

pooling()

property umi_len

resimpy.simulate.initiator.UMIDouble module

class resimpy.simulate.initiator.UMIDouble.umiDouble(seq_num, is_seed=False, umi_unit_pattern=3, umi_unit_len=12, is_sv_umi_lib=True, umi_lib_fpn='./umi.txt', working_dir='./simu/', condis=['umi'], sim_thres=2, permutation=0)

Bases: object

paste(read_struct=[])

pooling()

property umi_len

Module contents